rs247863884 SNP Detail

Summary

• ID
  rs247863884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108191803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTCCGGTC GGGGTGAGCT
  GGGGGCTGCG CGCCGCCGCG CCCGGGGGCC CCGTCCCCCG CGCTGGCCGT TGGCGCCGCG
  GCGCGCCCGC CGAGGACCAA GACTGCGGCC GCCTCCCGGA CTTCATCGCC AAGCTGACCA
  ACAATACGCA CCAGGTGAGC GCGCGAGGCC CGGGCGCCCG CCCCGGTTGG GTCGCCCCTC
  Y
  GGGCCCGCGG CCCCAGGCGG CCGCTCCGCT CCCATTGCAC GCTTCGAGGC TAGCGCGAGA
  CCCCGGTTGC GGAGGGCGGC GAGGCGCGGG GGCGGCGGGG GCCGGGGTGG CTGCGGCCCG
  TGGGGCTGTG TGTCGTCATA GCCGAGGCAA TCCGAGACTT TGACTCGCTG CATTCTTTGC
  TTCTGCTTCT TAAGTTGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359161874	MGP_WTSI_3_108087405	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247863884					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T	C	T	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359161874	MGP_WTSI_3_108087405	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108191803 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13698	CpG island 13698	within coordinates
Gm12523	predicted gene 12523	within coordinates
Gm19343	predicted gene, 19343	225 bp upstream
Gm66045	predicted gene, 66045	400 bp downstream
Rr583192	regulatory region 583192	1896 bp distal
Rr583193	regulatory region 583193	386 bp distal
Rr583194	regulatory region 583194	689 bp distal
Rr583195	regulatory region 583195	346 bp proximal
Sort1	sortilin 1	Intron
Tssr31239	transcription start site region 31239	413 bp downstream
Tssr31240	transcription start site region 31240	387 bp downstream
Tssr31241	transcription start site region 31241	345 bp downstream
Tssr35139	transcription start site region 35139	50 bp downstream
Tssr35140	transcription start site region 35140	63 bp downstream
Tssr35141	transcription start site region 35141	126 bp downstream