rs247627837 SNP Detail

Summary

• ID
  rs247627837
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGTGTGC TCATAAGTAA
  TTCAAAGATG TAGCTTGCTC TAAGCTGGGA TTGGCATGTT ATAAACATGA TAAAAATCTG
  AACATATCCA TGGAACACAG CTCCTAGGGC CTCATGCTAT CTGCAGACAT TGGTTCCCAG
  GGTAGACAAT GGGCAGTGCC CAATGTGGGA AGGCTCTGTG GTTGCTGGAT GAGCAGAGTA
  W
  TTCATTGGAG AGGAGAAGAA AATTCCCCTC CAGGCAGAAT GCATAGGCGA GTGGGCGTTG
  CACCTCCCCC ATTGAGAGAA CTTCTTGTTT TCTTTCATGC TCCAGCCTAC TGTGTTTCCT
  TTCTAATCTC TCTTTTTATT TTTCAAAAAC ACTTTCTCCT TCTAAGAGTT TTAGAATGAC
  TTCTACACAG AATGGAGAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss360024883	MGP_WTSI_3_142281754	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	A	A	T	A	A	T	T	A	T	A	T	T	T	T	A	T	A	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs247627837					SNP	T	T	T	T	T	T	T	T	T	T	A	A	T	A	A	T	T	A	T	A	T	T	T	T	A	T	A	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360024883	MGP_WTSI_3_142281754	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324551 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	1873 bp upstream
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1092 bp upstream
Rr586457	regulatory region 586457	within coordinates
Rr586458	regulatory region 586458	1322 bp proximal
Rr586459	regulatory region 586459	1823 bp proximal
Tssr32216	transcription start site region 32216	605 bp downstream
Tssr32217	transcription start site region 32217	567 bp downstream
Tssr32218	transcription start site region 32218	513 bp downstream
Tssr32219	transcription start site region 32219	476 bp downstream
Tssr32220	transcription start site region 32220	462 bp downstream
Tssr32221	transcription start site region 32221	444 bp downstream
Tssr32222	transcription start site region 32222	388 bp downstream
Tssr32223	transcription start site region 32223	331 bp downstream
Tssr32224	transcription start site region 32224	277 bp downstream
Tssr32225	transcription start site region 32225	44 bp upstream
Tssr32226	transcription start site region 32226	92 bp upstream
Tssr32227	transcription start site region 32227	1806 bp upstream
Tssr32228	transcription start site region 32228	1857 bp upstream
Tssr32229	transcription start site region 32229	1896 bp upstream
Tssr32230	transcription start site region 32230	1932 bp upstream
Tssr32231	transcription start site region 32231	1949 bp upstream
Tssr35947	transcription start site region 35947	385 bp downstream