rs247547219 SNP Detail

Summary

• ID
  rs247547219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113411556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGGGGTA CAGGAGGCTG AGAGACTTCA
  TGGCGTAGTC CATCCTTGTC AGTTGGATTG TGTTGGACCT AGAACACAGG CAGAAGCTTA
  TCTGGTTAGC GAGAAGGGAG GGGTCCTTCT CTTTCTTTCT TTGACCCAAT GCGCCCCAAC
  Y
  GCCACGCAGC AACCCTCTGC CCCAGTCTCT CATCTGACCA CCCATTTCCC CGGAGTCCAC
  AGTAACTACG ACTGAGCCAG CGTCCACCAC CCCCACCCAC TCCCCAGCTG CTCCCCAGCC
  TCAGCCTCAC TCACTCCATT GTTTCTCCGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910861	CHEV_6_113384589	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247547219					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113411556 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cidec	cell death-inducing DFFA-like effector c			Intron
				mRNA-UTR
Gm52871	predicted gene, 52871			287 bp upstream
Rr636516	regulatory region 636516			159 bp proximal
Tssr58211	transcription start site region 58211			297 bp upstream
Tssr62447	transcription start site region 62447			81 bp upstream
Tssr62448	transcription start site region 62448			49 bp upstream
Tssr62449	transcription start site region 62449			162 bp downstream
Tssr62450	transcription start site region 62450			182 bp downstream
Tssr62451	transcription start site region 62451			205 bp downstream
Tssr62452	transcription start site region 62452			1153 bp downstream