rs247521290 SNP Detail

Summary

• ID
  rs247521290
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50481639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGGGTCA AGGAAAGCTG
  TGCAAGCCTG TTAGGGAACC CCCAAATGTT TCAGTCCATG AGTATGAAGG CAGATCTACA
  CCTGGACACC AAGTGGGGTG TAAGTGGACA GGAATATAGG TGAGACCAGA GCGGGGAGGA
  GAGGATTACA CTTAAAATAG TTAACAAAAA ATGAAGAAGA CTGAAGCCAG GCACTGGGGG
  K
  GGGGGGGGGG GAATGACACA GAGAAGACAT AGAATAAACC TGGAAGATTT GAAATATTAA
  TATAATATAT AACATTTATC ATAAAATAGA TTTTCAGATC TGAGATGTAC TGAAGGGGTC
  AGTTTCATGA GGCTTGGTGA CTAATAGGAG TCACAAAGGA TAGGCAAGTG TCGGGGACTG
  CACCCAAGGC CTGGCTTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368269873	MGP_WTSI_6_50454658	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247521290					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368269873	MGP_WTSI_6_50454658	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50481639 () rs orientation: forward

Symbol	Name	Function Class
Gm40372	predicted gene, 40372	within coordinates
Rr630019	regulatory region 630019	125 bp proximal
Tssr60917	transcription start site region 60917	1062 bp downstream