rs247315893 SNP Detail

Summary

• ID
  rs247315893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106293517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCTTTA AGGTTAAACC
  GTCCCATCCT TTATTCTCAT CCCCTGCCTT TGCCCAAACA ACATCCATTG GCTAGGTGCG
  ACTACAGAGG TTCGTGGCCG TACCCAGCTT GCGGCAGTAG CAAAAGGCAT TGAAGAAGCG
  GCAGTAGCAC GTAGCGCACG GGTCGCAGCA AGGTACCTGC TGTCCCAAGC AGGACTCGTG
  Y
  AGCCTTACAC AGCGACGCGG AGAACGAGAC TCGCGGTTCT GTGGATCTAG CACCTGCATT
  CGTAGGGGAA TAAGGTTCAG GAAACTCTCA AACCCCGACC CCAGTAGGGT GGCAGTGGAC
  TGAGGTCAGG GAGGGGCTGC AGTTCTGCCC AGGTTGGGTA ATCCGGAAGT GGGGAGAGAT
  GATGGTATCT GATGCGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375915291	MGP_WTSI_8_108090785	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247315893					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375915291	MGP_WTSI_8_108090785	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106293517 () rs orientation: forward

Symbol	Name	Function Class
Agrp	agouti related neuropeptide	Coding-Synonymous
Atp6v0d1	ATPase, H+ transporting, lysosomal V0 subunit D1	838 bp upstream
Gm38250	predicted gene, 38250	within coordinates
Rr368598	regulatory region 368598	100 bp upstream
Rr401092	regulatory region 401092	664 bp downstream
Rr668942	regulatory region 668942	1979 bp distal
Rr668943	regulatory region 668943	694 bp distal
Rr668944	regulatory region 668944	627 bp distal
Tssr79153	transcription start site region 79153	698 bp downstream
Tssr82667	transcription start site region 82667	971 bp upstream
Tssr82668	transcription start site region 82668	938 bp upstream
Tssr82669	transcription start site region 82669	903 bp upstream
Tssr82670	transcription start site region 82670	814 bp upstream
Tssr82671	transcription start site region 82671	747 bp downstream