rs246810316 SNP Detail

Summary

• ID
  rs246810316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80021760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCATCCA TGTTTCCAAT
  TTACAGCGTA AGATACCATA CTGCAATGAA CATCTCCACA AATTCCACAC TTTTCTTCCT
  TTTAAGATTA ATATTTGGAT GGATGTAGGA GCCCGTGCTT AGTCCCAGCA CCTGGAAGGC
  AGAGGCAGGG AGATCTCTGA ATTCGAGGCC AGTCTGTTTT ACATTTTGAG TTCCGGGACA
  R
  CCATAGCTAC TTGGGGGGGG GGGGGGGGGA GATTGCTTGC TAGATCGTAG TGGCACACAC
  CTATAAATCC TCCTGTCTCA GATTGACACA AATTCGAAGC TATCTTGGAC TACACATTTG
  CAATCCTGTT TCAAAAGAAA AAAAGATTGC TAAAATTACT GCCTGAAACT GAGCTGGCCC
  ACTAAAAGTC CAGCTCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372044211	MGP_WTSI_7_87516898	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246810316					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372044211	MGP_WTSI_7_87516898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80021760 () rs orientation: forward

Symbol	Name	Function Class
Gm71928	predicted gene, 71928	within coordinates
Man2a2	mannosidase 2, alpha 2	637 bp upstream
Rr649878	regulatory region 649878	538 bp distal
Rr649879	regulatory region 649879	615 bp distal
Rr649880	regulatory region 649880	562 bp distal
Rr649881	regulatory region 649881	108 bp distal
Rr649882	regulatory region 649882	1527 bp proximal
Tssr67437	transcription start site region 67437	1653 bp downstream
Tssr67438	transcription start site region 67438	439 bp upstream
Tssr73222	transcription start site region 73222	1222 bp upstream
Tssr73223	transcription start site region 73223	1184 bp upstream
Tssr73224	transcription start site region 73224	1143 bp upstream
Tssr73225	transcription start site region 73225	644 bp upstream
Tssr73226	transcription start site region 73226	596 bp upstream
Tssr73227	transcription start site region 73227	518 bp upstream