rs246638106 SNP Detail

Summary

• ID
  rs246638106
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107689031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACCCTGA AGTCCTTCTG
  CCGCCTACCC ACTCACGTCT TTGAGCCTCA GTTTCCTCTG TAAACGAGAT TGACAGCAGT
  TGCCAGGGTA GCTGTGAGGG GGTTGTAGGA TTTGGGGTGA GAGGCCCAAG TCTAGATCTG
  GGTGAATATG GCCGAACCGG CCCAGATACT GAAACAGTCT GTCCCGCAGT CTGCTGTGGG
  K
  CAGCTAAGCC TGAGCTGACA CTGCTGGCAT TTGGCTGCTA TGGCGTCCGT GCCCAGTGTC
  TGCTATGGCT TGGCATACAG GGAGTGAGCA AGCTCTCCCC TGCACTCCCA GAATGCTCAG
  AATTAAGGGT TCTGGGATGG TATCTGGCTG TCTTGTCTTG TGCCCAGTGA CAGGGATGGT
  ATCTGGCTGT CTTGTGCCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321251716	CHEV_4_107504439	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246638106					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107689031 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor			Intron
				Noncoding-Transcript-Variant
Lrp8os1	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor, opposite strand 1			930 bp upstream
Rr597082	regulatory region 597082			478 bp distal
Tssr38270	transcription start site region 38270			877 bp downstream
Tssr38271	transcription start site region 38271			867 bp downstream