rs246628904 SNP Detail

Summary

• ID
  rs246628904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90418015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAGACACA CTAGAAGAGG GCACCAGATC TCGTTACGGA
  TGGTTGTGAG CCACCATGTG GTTGCTGGGA TTTGAACTCC GGACCTTTGG AAGAGCAGTC
  R
  GGTACTCTTA CCCACTCAGC CATCTCACCA GCCCCACATT TTTTGATGGC TTGTTTATTT
  CTGTTTCTGG CTATGTAGTA TGGGCTGGCT TGGAACTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320837928	CHEV_3_90314630	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246628904					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90418015 () rs orientation: forward

Symbol	Name	Function Class
Chtop	chromatin target of PRMT1	1210 bp upstream
Cpgi13465	CpG island 13465	939 bp distal
Gm56783	predicted gene, 56783	within coordinates
Rr375350	regulatory region 375350	672 bp upstream
Rr397813	regulatory region 397813	1031 bp downstream
Rr580381	regulatory region 580381	1602 bp distal
Rr580382	regulatory region 580382	1785 bp distal
Rr580383	regulatory region 580383	720 bp distal
S100a1	S100 calcium binding protein A1	326 bp downstream
Tssr30207	transcription start site region 30207	1603 bp downstream
Tssr30208	transcription start site region 30208	1022 bp downstream
Tssr34237	transcription start site region 34237	1977 bp upstream
Tssr34238	transcription start site region 34238	1202 bp upstream
Tssr34239	transcription start site region 34239	1180 bp upstream
Tssr34240	transcription start site region 34240	425 bp downstream
Tssr34241	transcription start site region 34241	1312 bp downstream