rs246549609 SNP Detail

Summary

• ID
  rs246549609
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28077967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTCGGC CCTCCACCAG
  GCTAGTGGAG CGGCCAGTCA GGCGAGAGGT GACCCCAGAC GGGATGGAGT CCGAGTTTAT
  GTTCCAAAGT CCTCCGAGGG ATTCGGTTCC TCCGTGGTCG GATGACAGGT CATGGCTCAT
  CGACTGGAGG CTCTGAGAGG AACAGGGTTC GGTTAGGCCA CCAGAAAAGG TAAGGTGACG
  W
  CGCCCCGCCC CTGTTGTAAA GCACTTCACG AGCTTGCCAG TCCGGTTTGT GGGTTCTCGG
  CCTGAGCCCC ACCCGGCTCA CACAAACTCC AGGGAGAACC TGACTACAGA GATTTGAGTG
  TTTCCACATG ACTGAAGGTA ATCCAGAAGG ATCTAGGAAG CCCAGTATCC CCGATCGAGA
  GAGGGTTCCC CCCCAAATCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858529	MGP_WTSI_7_29163561	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246549609					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858529	MGP_WTSI_7_29163561	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28077967 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm44710	predicted gene 44710			438 bp upstream
Gm57214	predicted gene, 57214			1870 bp downstream
Gm73785	predicted gene, 73785			1868 bp upstream
Rr368284	regulatory region 368284			1992 bp upstream
Rr380568	regulatory region 380568			1756 bp downstream
Rr400210	regulatory region 400210			668 bp upstream
Rr644239	regulatory region 644239			1378 bp distal
Rr644240	regulatory region 644240			588 bp distal
Rr644241	regulatory region 644241			within coordinates
Rr644242	regulatory region 644242			449 bp proximal
Rr644243	regulatory region 644243			703 bp proximal
Rr644244	regulatory region 644244			1588 bp proximal
Rr644245	regulatory region 644245			1701 bp proximal
Tssr2163	transcription start site region 2163			814 bp downstream
Tssr2164	transcription start site region 2164			947 bp downstream
Tssr2165	transcription start site region 2165			990 bp downstream
Tssr65461	transcription start site region 65461			1979 bp downstream
Tssr65462	transcription start site region 65462			1804 bp downstream
Tssr65463	transcription start site region 65463			1047 bp downstream
Tssr65464	transcription start site region 65464			489 bp downstream
Tssr65465	transcription start site region 65465			810 bp upstream
Tssr71490	transcription start site region 71490			1548 bp upstream
Tssr71491	transcription start site region 71491			1451 bp upstream
Tssr71492	transcription start site region 71492			1373 bp upstream
Tssr71493	transcription start site region 71493			1323 bp upstream
Tssr71494	transcription start site region 71494			1288 bp upstream
Tssr71495	transcription start site region 71495			1258 bp upstream
Tssr71496	transcription start site region 71496			911 bp upstream
Tssr71497	transcription start site region 71497			663 bp upstream
Tssr71498	transcription start site region 71498			602 bp upstream
Tssr71499	transcription start site region 71499			508 bp upstream
Tssr71500	transcription start site region 71500			484 bp upstream
Tssr71501	transcription start site region 71501			457 bp upstream
Tssr71502	transcription start site region 71502			432 bp upstream
Tssr71503	transcription start site region 71503			391 bp upstream
Tssr71504	transcription start site region 71504			360 bp upstream
Tssr71505	transcription start site region 71505			343 bp upstream
Tssr71506	transcription start site region 71506			329 bp upstream
Tssr71507	transcription start site region 71507			282 bp upstream
Tssr71508	transcription start site region 71508			248 bp upstream
Tssr71509	transcription start site region 71509			188 bp upstream
Tssr71510	transcription start site region 71510			144 bp upstream
Tssr71511	transcription start site region 71511			108 bp upstream
Tssr71512	transcription start site region 71512			28 bp upstream
Tssr71513	transcription start site region 71513			554 bp downstream
Tssr71514	transcription start site region 71514			683 bp downstream
Tssr71515	transcription start site region 71515			705 bp downstream
Tssr71516	transcription start site region 71516			1739 bp downstream
Zfp36	zinc finger protein 36			Intron
				mRNA-UTR