rs246479200 SNP Detail

Summary

• ID
  rs246479200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137851024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAACTGGA GACATTTTAG
  ATGTGAAAGA CAAAGGCTCC CCCTGGTGTC AGAGAGCTGT AAAACACGGC TTTTGTAATT
  CTCACAGTTA AGGCAGCTCA ACACTTCAAA ATTTTGAACA TAGAGAAACT ACTGAAAAGT
  ATTGCCACGG ATAAATATTG CTTTGTTTCA TAGGAATTTA GTACTAGAGA CCAGAGGAGT
  Y
  AGTAACTTTG AAATTACTCT CTTCGTTTTC TTTTAGAATT CTATGAAATC CCATATCTAC
  TCAAGTTATC CTCTCGGTTT GGAATAAGTC AACTGAGTTT CAAGTTTCAG AGCTGTGCTC
  TCTTGAAAAT ATGTTTCATA AAATGTTTTC CTGTTAATTT CAATTTTGCT TTTAAGTTTG
  CATTACTGAG TCTTGTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359902722	MGP_WTSI_3_137808227	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246479200					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359902722	MGP_WTSI_3_137808227	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137851024 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	295 bp upstream
Cpgi13871	CpG island 13871	1074 bp distal
Mttp	microsomal triglyceride transfer protein	1845 bp upstream
Rr375797	regulatory region 375797	455 bp downstream
Rr398069	regulatory region 398069	33 bp downstream
Rr586084	regulatory region 586084	1886 bp distal
Rr586085	regulatory region 586085	1736 bp distal
Rr586086	regulatory region 586086	1856 bp distal
Rr586087	regulatory region 586087	within coordinates
Rr586088	regulatory region 586088	147 bp distal
Trmt10a	tRNA methyltransferase 10A	Intron
Tssr31944	transcription start site region 31944	1786 bp downstream
Tssr31945	transcription start site region 31945	1767 bp downstream
Tssr31946	transcription start site region 31946	1420 bp downstream
Tssr31947	transcription start site region 31947	1377 bp downstream
Tssr31948	transcription start site region 31948	1344 bp downstream
Tssr31949	transcription start site region 31949	1326 bp downstream
Tssr35880	transcription start site region 35880	1867 bp upstream
Tssr35881	transcription start site region 35881	1550 bp upstream
Tssr35882	transcription start site region 35882	1531 bp upstream