rs246473867 SNP Detail

Summary

• ID
  rs246473867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74513857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCGTGT TTATGATAGG
  AAACCAATTT AGGTGGGCTT AAGGTAGACT TCGAAGAGGA CATTAATCGC CGTAGAGAGC
  TTTCCCTCTA TTTGGGTGGG GGGGGGGTGG GTGAGTTGAG GACCTTAGAG GAGGGAAGTA
  CATTTGCAGC CAGTTGATGA GTGGGAACAC GAGAGCCTCC TGCCTTTCAG GGAGAGGGTA
  R
  GTGATCTGCC GCACTGGACT TAACCCCAAC CTCTGGCTGG CGCTCAGCTC GGAGTTGAGC
  AGATGCTCCT GTGGGCGCGC TCTTGTCTCT CTCCCTTCAT GTTCCAGTTC AGAGCCTGCC
  TTGCCATCAT CCTTTTTCCT ATCTCAGTGC CAGCCTAGAG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTCCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484824	MGP_WTSI_2_74521570	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246473867					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484824	MGP_WTSI_2_74521570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74513857 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm28309	predicted gene 28309			within coordinates
Gm74919	predicted gene, 74919			434 bp downstream
Hoxd11	homeobox D11			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr559344	regulatory region 559344			1180 bp distal
Rr559345	regulatory region 559345			57 bp distal
Rr559346	regulatory region 559346			1623 bp proximal
Tssr18399	transcription start site region 18399			1506 bp downstream
Tssr18400	transcription start site region 18400			1483 bp downstream
Tssr18401	transcription start site region 18401			1187 bp downstream
Tssr18402	transcription start site region 18402			45 bp downstream
Tssr18403	transcription start site region 18403			320 bp upstream
Tssr18404	transcription start site region 18404			380 bp upstream