rs246239189 SNP Detail

Summary

• ID
  rs246239189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:95854679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGAGAGA GTCACAATAC
  CGACTCTTCA ATTCTTTAGG CCTATAGTTT TCATGAAGTT TCATTAGTAT TTATTGTGTC
  TAGAATACAC TTTAGCAAAA TTGTGAGGTT GCGTCGAAAA TGCCCTCACT GTATTTTTAA
  AATGAAACTG ATTTATAACA GGGGGTTTAT AATTTATTGT CCAACAGTTT TGCTCAACGT
  Y
  TAAATATAAA AATCACAGAG AGTTAAGCGA ACCAGCTGCC TCTTAATACA GAGTATGAAT
  TGATGGATTA ATGAATGAGT GAAGTGGTGA GAACCAAGAG TTAGAATAAT ATTGTAGCCC
  CTTCCAATAA TGACACAATT TATCATGTTG GATTGCCACT TTCCAGATTT TATGGACCAT
  GCCACCAACA TCCTCAGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362492434	MGP_WTSI_4_95633133	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246239189					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362492434	MGP_WTSI_4_95633133	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95854679 () rs orientation: forward

Symbol	Name	Function Class
9530080O11Rik	RIKEN cDNA 9530080O11 gene	within coordinates
Cpgi14458	CpG island 14458	401 bp proximal
Hook1	hook microtubule tethering protein 1	798 bp upstream
Rr398349	regulatory region 398349	520 bp upstream
Rr595498	regulatory region 595498	634 bp distal
Rr595499	regulatory region 595499	within coordinates
Rr595500	regulatory region 595500	517 bp proximal
Rr595501	regulatory region 595501	1203 bp proximal
Tssr37834	transcription start site region 37834	675 bp upstream
Tssr37835	transcription start site region 37835	763 bp upstream
Tssr37836	transcription start site region 37836	880 bp upstream
Tssr37837	transcription start site region 37837	942 bp upstream
Tssr37838	transcription start site region 37838	963 bp upstream
Tssr42465	transcription start site region 42465	563 bp downstream