rs245902550 SNP Detail

Summary

• ID
  rs245902550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148214587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAAGCC TCATGGTGGG
  AAAAGCCCAA GCCATCCCAG AGAATGGAAC TAGGTGCCCT CGAGGCGTAA AGCAAACACT
  AGTCCAGCCC CAATGGGGAA AAAAAATGTG AGGCCAGGCT ATGCCAGTTT TGGGTGAGTT
  TAGCGTCCCG AACACACCCA GCCTCCGGGG GGCGTCGTTG AAAGGGACAG AGGCGCCCTG
  R
  TCAGCTTTGC CCCCACTCAG GCAGTCTCTG GAGACTTCTT CCAATGGTGA TAGACGAGTC
  CTCGATCTGA GATACCACCC AGAGTTAGAG ACAAAAAGAC ACTGGGTCCC AAAGGTAGAA
  GGCTAGTGCG GAGGACCCGG TACACCGAAA GAGCAGCAAG GGCGCACGCG AGGCAGAGTG
  CCACAAAGCA CGAAAAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321417526	CHEV_4_147504239	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245902550					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148214587 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15291	CpG island 15291	within coordinates
Draxin	dorsal inhibitory axon guidance protein	Intron
Mad2l2	MAD2 mitotic arrest deficient-like 2	254 bp upstream
Rr604596	regulatory region 604596	within coordinates
Rr604597	regulatory region 604597	22 bp distal
Rr604598	regulatory region 604598	558 bp proximal
Rr604599	regulatory region 604599	796 bp proximal
Tssr1378	transcription start site region 1378	703 bp upstream
Tssr40251	transcription start site region 40251	612 bp upstream
Tssr40252	transcription start site region 40252	645 bp upstream
Tssr40253	transcription start site region 40253	753 bp upstream
Tssr44585	transcription start site region 44585	508 bp downstream
Tssr44586	transcription start site region 44586	521 bp downstream
Tssr44587	transcription start site region 44587	548 bp downstream