rs245871662 SNP Detail

Summary

• ID
  rs245871662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:150596315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG TGGTGGCACA TACCTTTAGT
  Y
  CCAGCATTGG GAAGGCAGTG GCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321723926	CHEV_5_151475425	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245871662					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150596315 () rs orientation: forward

Symbol	Name	Function Class
Gm40353	predicted gene, 40353	Intron
Pds5b	PDS5 cohesin associated factor B	889 bp upstream
Rr399544	regulatory region 399544	752 bp upstream
Rr625790	regulatory region 625790	399 bp proximal
Rr625791	regulatory region 625791	839 bp proximal
Rr625792	regulatory region 625792	988 bp proximal
Tssr49955	transcription start site region 49955	902 bp upstream
Tssr49956	transcription start site region 49956	996 bp upstream
Tssr49957	transcription start site region 49957	1034 bp upstream