rs245750182 SNP Detail

Summary

• ID
  rs245750182
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108190052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGGTAG CACTGTTGAG
  TTAGCTTTCT TCTTTCCCCA TAGTAAGACA ATAGACCATT CATCTTTGTC ACCCAAACAA
  AGAAATATTC CTTTGTAGCC CCCTTTTTCC CCTCCGTAAC TGGTCACATG CTACTGTAAC
  TGACTGCCTT GTGATCTAAT CCATACTTGA CACGAATTAA AAATAAGTTG TGCTTAAAAA
  W
  AAATAATGTG GCGTTTATAT TTCTGGAAAG AAAACACACT CATCAGTTTT TATCTTGTTC
  AGTGGCTCAG AAACTGGAGG GCTTTTCTGT TGATTTGCCA TCCTGTTCCG CTTTCCAGAG
  CTTCACAGCT CCCTTCTTAC TGTGGTTTTG GGGAGAGGAA AAACTCCCGA GTACGTAAAT
  AGTTTTGTTT GTACTATTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359161853	MGP_WTSI_3_108085654	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	A	T	T	T	A	A	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245750182					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	A	T	T	T	A	A	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359161853	MGP_WTSI_3_108085654	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108190052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13698	CpG island 13698	619 bp proximal
Gm12523	predicted gene 12523	1162 bp downstream
Gm19343	predicted gene, 19343	1976 bp upstream
Rr583192	regulatory region 583192	145 bp distal
Rr583193	regulatory region 583193	856 bp proximal
Rr583194	regulatory region 583194	1041 bp proximal
Sort1	sortilin 1	1346 bp upstream
Tssr31239	transcription start site region 31239	1327 bp upstream
Tssr31240	transcription start site region 31240	1353 bp upstream
Tssr31241	transcription start site region 31241	1367 bp upstream
Tssr35139	transcription start site region 35139	1801 bp downstream
Tssr35140	transcription start site region 35140	1814 bp downstream
Tssr35141	transcription start site region 35141	1877 bp downstream