rs245658142 SNP Detail

Summary

• ID
  rs245658142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154110553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTC TAGATGAGGA GGGGCGGACC
  Y
  CCCTCGGACT TTTCCCAGCC TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321438233	CHEV_4_153400205	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245658142					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154110553 () rs orientation: forward

Symbol	Name	Function Class
Ccdc27	coiled-coil domain containing 27	543 bp downstream
Cpgi15428	CpG island 15428	within coordinates
Gm57064	predicted gene, 57064	within coordinates
Rr606055	regulatory region 606055	1251 bp distal
Rr606056	regulatory region 606056	within coordinates
Rr606057	regulatory region 606057	48 bp proximal
Rr606058	regulatory region 606058	124 bp proximal
Smim1	small integral membrane protein 1	mRNA-UTR
Tssr40573	transcription start site region 40573	37 bp downstream
Tssr40574	transcription start site region 40574	98 bp upstream
Tssr44854	transcription start site region 44854	462 bp upstream
Tssr44855	transcription start site region 44855	410 bp upstream
Tssr44856	transcription start site region 44856	177 bp upstream
Tssr44857	transcription start site region 44857	104 bp upstream
Tssr44858	transcription start site region 44858	4 bp upstream