rs245635878 SNP Detail

Summary

• ID
  rs245635878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:150597156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCCCGC CAAAGCCTGG
  GAGGCTGAGT CCAAGCTGAG AGAACGCACT GACAGCTGCC CATCACTCTG CTGCCAAGGA
  GACAGAGGAG GCCGCGCCAG CAGGGCGGAG CCTGCGCGTG CGCGCCCCCG GGTGTGTGGG
  GCGGAGCCCG GAGCGCGGGC TGAGGAGCGC GTGCGCACGC GCCTGAGCGA GAAGCCGTGC
  R
  GCCGGTAGGG GGCGCTGAGA ACCCACGCGG CGCTCTGCCT GCCCCCCAGG CGCTGTCCGC
  CGCGGTTCGA TTGGAGCAGC CGCGGAGCTG CTCTTGGCGC CATTTTGAAG CGGAGAGGCG
  GAGGAACGGC CTGGACTGGC TGCGGAAGGG GAGGGGGGGC GGGAGGAGGC GATTGGATGC
  GGCGGCGGCG GCGGCGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367187228	MGP_WTSI_5_151476266	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245635878					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367187228	MGP_WTSI_5_151476266	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150597156 () rs orientation: forward

Symbol	Name	Function Class
Gm40353	predicted gene, 40353	Intron
Pds5b	PDS5 cohesin associated factor B	48 bp upstream
Rr399544	regulatory region 399544	within coordinates
Rr625790	regulatory region 625790	within coordinates
Rr625791	regulatory region 625791	within coordinates
Rr625792	regulatory region 625792	147 bp proximal
Rr625793	regulatory region 625793	1423 bp proximal
Tssr49955	transcription start site region 49955	61 bp upstream
Tssr49956	transcription start site region 49956	155 bp upstream
Tssr49957	transcription start site region 49957	193 bp upstream