rs245618096 SNP Detail

Summary

• ID
  rs245618096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28316743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATGAATC CAGGTAGGTC
  ACCGCGGAAA AGCTACAAAG GAGGAAACAC TGGGTTAGGT ACTATGTTGC CCAATTAATG
  TCGGCCTTGG AGTCACCTGA ATCCTTCGAG CTACTGCACC CAGGGAGCAA GCTTCTCTTT
  TCAATTCGGT CATTTCCGTG GGGAATTGCG GCACGCGCAG GTCTTGGGTG TGGCGATATC
  Y
  AGACAGAGCT CACATCTCTC GGATTTCCAG CTTCTAGCAA ACCTACTCAG CCTAGAGAAC
  CACAGACGAT TCGGGCCTGC CTTCCTGCAA CCCAGTGGCC GCGAATGACC GTGACCCTGT
  GGCCACTGCT CAGCACCAAA GCCAGGCTGC CGGCTCGGCG CGTGTGAGCT TCTCCCCAAC
  TCGCTCTGCG CGGGGAGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357366054	MGP_WTSI_3_28161516	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245618096					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357366054	MGP_WTSI_3_28161516	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28316743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13025	CpG island 13025	within coordinates
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	131 bp proximal
Rr574556	regulatory region 574556	1060 bp proximal
Rr574557	regulatory region 574557	1611 bp proximal
Tnik	TRAF2 and NCK interacting kinase	619 bp upstream
Tssr28643	transcription start site region 28643	611 bp upstream
Tssr28644	transcription start site region 28644	637 bp upstream
Tssr28645	transcription start site region 28645	761 bp upstream
Tssr28646	transcription start site region 28646	802 bp upstream
Tssr28647	transcription start site region 28647	829 bp upstream
Tssr28648	transcription start site region 28648	838 bp upstream
Tssr28649	transcription start site region 28649	973 bp upstream
Tssr32865	transcription start site region 32865	1641 bp downstream