rs245570062 SNP Detail

Summary

• ID
  rs245570062
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34706817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTCTTT CATTTCTTTG
  TGGCTAGCAT GCTTATACAT AACTTCTTGG GGAACTGGAT AACTGTTCAG CCACCAAGAT
  CTTGATGTTA CCAGCAATGT CTGTTAGCTT TAACTGCAGA AGAAAAAAAT GGCCGAATGA
  TTAATAACGG GGAACTGAAA TGCGTTGACA TTTCTAGAAT AGAAACTAGA AGCATATATT
  K
  TAAGTTCACC CCCCTCCTTC CCTGAGCAGC GTGAATAAGC GCGATGTGGG CTTAAGCTCG
  CTTTAGCACT TGTTGCCAGA ACGAGTCAAT TCTGAAAATT TTCGTGTAGC TTAGCAGATG
  AGATACTGCG CCAAATCAGA ACCAGGTTGG CTGGGTTGGT TTTCATTTTC TTCACAACAC
  AATGGCCCTT TGAAATGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357517512	MGP_WTSI_3_34551590	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs245570062					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357517512	MGP_WTSI_3_34551590	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34706817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13072	CpG island 13072	1139 bp distal
Gm54566	predicted gene, 54566	510 bp upstream
Gm64654	predicted gene, 64654	207 bp upstream
Rr439	regulatory region 439	1357 bp proximal
Rr366704	regulatory region 366704	564 bp upstream
Rr575169	regulatory region 575169	within coordinates
Rr575170	regulatory region 575170	251 bp proximal
Sox2	SRY (sex determining region Y)-box 2	207 bp downstream
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates
Tssr28826	transcription start site region 28826	1888 bp downstream
Tssr28827	transcription start site region 28827	1586 bp downstream
Tssr28828	transcription start site region 28828	918 bp upstream
Tssr32980	transcription start site region 32980	1948 bp upstream
Tssr32981	transcription start site region 32981	1621 bp upstream
Tssr32982	transcription start site region 32982	1321 bp downstream