rs245569845 SNP Detail

Summary

• ID
  rs245569845
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155157026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCATCTT GGCCTAGCAG
  GTAGGGAGGG GGTCTCCCTG AGTTGCACAT TTTTAAAAAC TGTATTAGGA GCCGGGCGTG
  GTGGCACACG CCTTTAATCC CAGCACTCGG GAGGCAGAGG CAGGTGGATT TCTGAGTTCG
  AGGCCAGCCT GGTCTACAGA GTGAGTTCCA GGACAAAACA AACAAACAAA AAAAAAAAAA
  C
  AAAAAAAAAA AAAAGGGAAC TGACTCCTGC AAGTTGTTCT CTGATCTCCA CACATGTGCA
  ATGGCTTGTG TGCAACCTAA TACAGTTTTT TGTTTGTTTG TTTGTTTGTT TGTTTTTGTT
  TTTTTTGAGA CAGGGTTTCT CTGTATAGCC CTGGCTGTCC TGGTACTCAC TCTAGACCAG
  GTTGGCCTCG AACTCAGAAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss363784568	MGP_WTSI_4_154446678	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	KK/HlJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs245569845					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363784568	MGP_WTSI_4_154446678	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155157026 () rs orientation: forward

Symbol	Name	Function Class
Pex10	peroxisomal biogenesis factor 10	163 bp downstream
Rer1	retention in endoplasmic reticulum sorting receptor 1	1541 bp downstream
Rr606361	regulatory region 606361	1336 bp distal