rs245240229 SNP Detail

Summary

• ID
  rs245240229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129086981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT GCCTGATCCC CCAGAGCTTC
  Y
  TCTGTGGGCT TCTGCTTTGA CTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320504481	CHEV_2_129070797	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245240229					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129086981 () rs orientation: forward

Symbol	Name	Function Class
Gm14024	predicted gene 14024	1315 bp upstream
Rr373845	regulatory region 373845	881 bp upstream
Rr564889	regulatory region 564889	1465 bp distal
Rr564890	regulatory region 564890	845 bp distal
Rr564891	regulatory region 564891	402 bp distal
Rr564892	regulatory region 564892	within coordinates
Rr564893	regulatory region 564893	448 bp proximal
Tssr20109	transcription start site region 20109	1296 bp upstream