rs245027500 SNP Detail

Summary

• ID
  rs245027500
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161617132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTACCCC TCTCACCTAT GCCAAAACAA
  CTCCCAAAGT GTTATTTTTC TGCTGCCTTC ATCCTGCCCC ACCCCAGCTG CTAATTCTCC
  TGAGGTCACT CTGCTGGCAA TCTCAGGCTG TTCCTTCCTT TTGCCCCCAG CCCTTCCCCC
  S
  GCACCCTCCC CGCCCCACCC TGATCATCCA GGCCTGCTTT TTCTCACCTG TGACACATTT
  CTTATCTTCC CCTCCTTCCC TAGTCCCATG GCTGCTCTCC CTGTACCAGA TGAGTCTTTT
  GTGATTTTTA TATCTCAACT CCCAGGATTC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320081631	CHEV_1_163719694	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs245027500					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161617132 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	1068 bp upstream
Rr421846	regulatory region 421846	892 bp distal
Rr421847	regulatory region 421847	1989 bp proximal
Tssr14586	transcription start site region 14586	1188 bp upstream
Tssr14587	transcription start site region 14587	1107 bp upstream
Tssr14588	transcription start site region 14588	1092 bp upstream
Tssr14589	transcription start site region 14589	1080 bp upstream
Tssr14590	transcription start site region 14590	1067 bp upstream
Tssr14591	transcription start site region 14591	1057 bp upstream