rs244888708 SNP Detail

Summary

• ID
  rs244888708
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110157081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACCCCG GCAGTTAAAC
  AAAAGAAACA GAAATACAAG AGTTTCTTTA TACTACATGC TTTCCAGGTT TAAAAGCCCG
  TTAGTAAGCA CACTGCATCA GTCCTTGGTC AGGGATGCTC ACTTTTAAAA TAAACACTGC
  CAGAAGAATG TCCTCAAATG AAGACTGGAG CGGTGAGGTA AAAGAGACAG CTATGTCCCC
  W
  ACTTGCATAG GCGATCTCCC TTTCTCTTCG GACCTTCCGA AGAAGGTGGA GGGGGAGAAA
  AGGCAACGCT CAGTCCTCCA TGGCAAAGTC TTTGGTCTTT TCCTCATGGT CTCCCACTTT
  GTAGCGCAGA AGTATGCGCA GACGCCGGGG GTTGTCCGGG GAGGGCAGCA GGGTGATCTC
  TCCGGAAATG TCCGTATCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359207458	MGP_WTSI_3_110052683	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244888708					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359207458	MGP_WTSI_3_110052683	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110157081 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C130013H08Rik	RIKEN cDNA C130013H08 gene			250 bp upstream
Cpgi13720	CpG island 13720			within coordinates
Prmt6	protein arginine N-methyltransferase 6			mRNA-UTR
				Noncoding-Transcript-Variant
Rr397950	regulatory region 397950			1110 bp upstream
Rr583471	regulatory region 583471			within coordinates
Rr583472	regulatory region 583472			840 bp proximal
Rr583473	regulatory region 583473			1218 bp proximal
Rr583474	regulatory region 583474			1333 bp proximal
Tssr31306	transcription start site region 31306			378 bp upstream
Tssr31307	transcription start site region 31307			418 bp upstream
Tssr35241	transcription start site region 35241			1198 bp downstream
Tssr35242	transcription start site region 35242			1603 bp downstream