rs244800871 SNP Detail

Summary

• ID
  rs244800871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108352600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGC CGGAAGCCGC AGTGTTAGGC
  R
  GGGTCCAGAG GGAGTGGTGA GAAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320866593	CHEV_3_108248202	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244800871					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108352600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13702	CpG island 13702	within coordinates
Gm56809	predicted gene, 56809	within coordinates
Rr397936	regulatory region 397936	within coordinates
Rr583237	regulatory region 583237	1024 bp distal
Rr583238	regulatory region 583238	within coordinates
Rr583239	regulatory region 583239	29 bp distal
Rr583240	regulatory region 583240	89 bp proximal
Sars1	seryl-tRNA synthetase 1	75 bp upstream
Tssr31251	transcription start site region 31251	987 bp downstream
Tssr35146	transcription start site region 35146	106 bp upstream
Tssr35147	transcription start site region 35147	73 bp upstream