rs244764993 SNP Detail

Summary

• ID
  rs244764993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:42562617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTTTT TTTTTTTGTT
  TTTTTTTGTT TTTTTTTTTT GTTGTTGTTG TTTCTGTTTT TTTTTTTTTT TTTTTTTTCA
  AGACAGGGTT TCTCTGTGTA GCCCTGACTG TCCTGGAACT CACTCTGTAG ACCAGGCTGG
  CCTTGAACTC AGAAATTTGC CTGCCTCTGC CTCCCAAGTG CTGGGATTAA AGGCGTGCAC
  Y
  ACCACACCCA GCCCCAACTC TGTTTTTGTC ATGCATTAGA AAAGTGCAGT GATTGGCAGG
  TTTAATTAAA TCTTTAAGCA TATGTAGTAA AGTCACTGGA TTCAGCAAGT CAAGGGCTGT
  GGTTGACCAT TTGTGTATTC ATGCTTAAAT TTGTGCTGGG GTATCAGGAT CTCTTGGCTG
  ACAGCCCATT TCAGCCATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368091150	MGP_WTSI_6_42535682	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244764993					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368091150	MGP_WTSI_6_42535682	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42562617 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr629347	regulatory region 629347			1876 bp distal
Rr629348	regulatory region 629348			1975 bp distal
Tcaf3	TRPM8 channel-associated factor 3			Intron
				Noncoding-Transcript-Variant
Tssr56046	transcription start site region 56046			457 bp downstream
Tssr56047	transcription start site region 56047			308 bp downstream
Tssr56048	transcription start site region 56048			277 bp upstream
Tssr56049	transcription start site region 56049			327 bp upstream
Tssr60620	transcription start site region 60620			57 bp downstream
Tssr60621	transcription start site region 60621			75 bp downstream
Tssr60622	transcription start site region 60622			121 bp downstream
Tssr60623	transcription start site region 60623			177 bp downstream
Tssr60624	transcription start site region 60624			219 bp downstream
Tssr60625	transcription start site region 60625			287 bp downstream
Tssr60626	transcription start site region 60626			302 bp downstream
Tssr60627	transcription start site region 60627			318 bp downstream
Tssr60628	transcription start site region 60628			462 bp downstream
Tssr60629	transcription start site region 60629			517 bp downstream
Tssr60630	transcription start site region 60630			586 bp downstream
Tssr60631	transcription start site region 60631			630 bp downstream
Tssr60632	transcription start site region 60632			682 bp downstream
Tssr60633	transcription start site region 60633			708 bp downstream
Tssr60634	transcription start site region 60634			721 bp downstream
Tssr60635	transcription start site region 60635			787 bp downstream
Tssr60636	transcription start site region 60636			892 bp downstream
Tssr60637	transcription start site region 60637			1148 bp downstream
Tssr60638	transcription start site region 60638			1188 bp downstream
Tssr60639	transcription start site region 60639			1239 bp downstream
Tssr60640	transcription start site region 60640			1494 bp downstream