rs244417643 SNP Detail

Summary

• ID
  rs244417643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172389869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGGGG GGGCTGAGGA
  AAGGCGAATG CAGACCCTTC ATGCCCTTCT GTCGTCCTCC CCCCTCCCCA CTCGGCCGAA
  AGCTCCGGTG CAGAAAGCAC TCGGTCCCCC TGGGCTTCTT GGATTATCGC TGAGGTGGGA
  AGAACAGGGA AAGCCTGGGG TAGGGTGAGC CGCACCGCCC CCCCTGGCCA GGAGAGGAGC
  R
  GAACCCCGCC AGACCTGTGA CAGTTGCCTT CCAGAGAGAG CCTGGGACCT GGCGTTCCCA
  GTCCTGAGCT TGATGCGGGC AGCACCAGTT CTTTCTGGAG CAGGTGCCCT CTTCTCCCGC
  TAATTCCAGG GCCTCTGTTT TGGAGGCTCG GTCTGGATTG CCTGCCTTTT TAACTTAGCC
  GGAAAAGCCC CCTTGATTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356643173	MGP_WTSI_2_172373449	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244417643					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356643173	MGP_WTSI_2_172373449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172389869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12822	CpG island 12822	1834 bp distal
Cpgi12823	CpG island 12823	within coordinates
Cpgi12824	CpG island 12824	738 bp proximal
Cpgi12825	CpG island 12825	1310 bp proximal
Rr571697	regulatory region 571697	1154 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21963	transcription start site region 21963	1750 bp downstream
Tssr21964	transcription start site region 21964	1725 bp downstream
Tssr21965	transcription start site region 21965	1717 bp downstream
Tssr21966	transcription start site region 21966	1632 bp upstream
Tssr21967	transcription start site region 21967	1687 bp upstream