rs244201447 SNP Detail

Summary

• ID
  rs244201447
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189494715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTGTTC AAAGTGGTGA
  ATGGTTCCTG CACCATGAAG GAAAAGCAGT AGTTTGGGGA TGACCATTGA CTGCCCCACT
  TAATGTTCAT AGCAAAAACG TGCTCTGAAC ATTATTAGAA TTCTTTATAA TGGGCAAGCT
  TGGTGGAAAC TTGATGGTTA ACAGGCTTGA GGGTGGTGGT GTGTGCAGTG CTCACGTGAA
  S
  GTCAATGACC AGTGTTGTTT CTTGGAGCCT TTTGCCTGGG CTTTTTGAGG CAGTCTCTCA
  CTAGCCTCGA ACTCAGTGAG TAGGCTGACT GCTCAGTGAG CTCCAAGGAT TCATCTGTTT
  TCTGTGTCCC CAGCACTGAG ATGACAGGCT CGTGCTACAG CACCCGATTC ATGAGGGCTC
  TGGGGATCAA GTGAAGGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352796332	MGP_WTSI_1_191586397	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244201447					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352796332	MGP_WTSI_1_191586397	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189494715 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr372632	regulatory region 372632	140 bp downstream
Rr425841	regulatory region 425841	228 bp distal
Rr425842	regulatory region 425842	1761 bp proximal