rs244023538 SNP Detail

Summary

• ID
  rs244023538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111271872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAGGGAAG AGGGGTGCCG CTGCTCCCTT
  AGGATAAAAA CAGCCCTGGT CTAACCCTCT GGTATCCCAG CAGCTGGTTC AACTGGAAAC
  CTCAGATTAC TCTAGTTCTG GCCAAAAACT GGTTTGGCAG CTCTAGGGGA ATGTTTCTGG
  Y
  TCACTGACCC TCACAGCAGG TGCTGGCAAT TTTGCAAAAG AAAGAGAAAA GGGGGAAATG
  GGTTTGGAGG GTGGACTGAA GGAACGGAGG CGCTTAGCTA AATTCGAAAC ACTAAACTAT
  TGAATCCGCC CGAAAGCGAC TTTTAGCAGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321261803	CHEV_4_111087280	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244023538					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111271872 () rs orientation: forward

Symbol	Name	Function Class
Agbl4	ATP/GTP binding protein-like 4	Intron
Bend5	BEN domain containing 5	331 bp upstream
Gm68588	predicted gene, 68588	1476 bp downstream
Gm68593	predicted gene, 68593	898 bp downstream
Rr597456	regulatory region 597456	within coordinates
Rr597457	regulatory region 597457	362 bp proximal
Tssr38381	transcription start site region 38381	284 bp upstream
Tssr38382	transcription start site region 38382	461 bp upstream
Tssr38383	transcription start site region 38383	563 bp upstream