rs244016908 SNP Detail

Summary

• ID
  rs244016908
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130898510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATTGTG AGTGGTTGTG
  AGCCACCATG TGGTTGCTGG GATTTGAACT CAGGACCTTC GGAAGAGCAG TCAGTGCTCT
  TACCTGCTGA GCCATCTCTC CAGCCCTTTT TTTGGTTTTT CAAGACAGGG TTTCTCTGTA
  AAGGCCTGGC TGTCCTGGAA CTCACATTGT AGACCAGGCT GGTCTCGAAC TCAGAAATCC
  R
  CCTGCCTTTG CCTCCTGAGT GCTGGGATTA AAGGCGTGCA CCACCACGCC TGGCCTTGTG
  CCTGAGTTCT TACTGCTATA CTTGTGAGTA CATTCTCCAC GTGTGCGTTG TCCCTACACC
  TACCAACTCT GGGGTAATTA ATTGTGGTTT TGCAATTAAC AGACTCTCCC CCTTAAATAT
  GTACCTTGCC TCCTAATATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359731215	MGP_WTSI_3_130807779	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	A	A	G	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs244016908					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	A	A	G	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359731215	MGP_WTSI_3_130807779	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130898510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13831	CpG island 13831	1105 bp proximal
Gm36603	predicted gene, 36603	within coordinates
Gm56784	predicted gene, 56784	1314 bp upstream
Lef1os1	LEF1 opposite strand RNA 1	within coordinates
Rr375742	regulatory region 375742	1628 bp downstream
Rr585264	regulatory region 585264	824 bp proximal
Rr585265	regulatory region 585265	1325 bp proximal
Tssr31682	transcription start site region 31682	1319 bp upstream