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rs243904777 SNP Detail
Summary
  • ID
    rs243904777
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:17079499 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCTGTGTCT TCTTTCATGG
    AGAACTTCTC CTGTAATAGG AAGTCTGTAA ATACAGAACA CAGTGAACCA AACCCTCCTC
    TCCTTCCTTT TCCTCTCCAG CTTGGCTCCC TCCCCACCAC CGAGTCATGC CCCTAAGGAC
    TTTTCTAACC CAGCAGGTCA GATAGCAGCT CTAAATCAGT TAAGGCACAC CATATAAATG
    Y
    ATTAGGTTTT GATTTGTTTT GTTGTCCGGA TCACGGGGCA ATGTGGGAAG TCGGGGTATT
    AGTAAATTAG CAAAAACAGG GACCCAGCTG GCAGTACTCT CCACTCCTGG TGTCTTAAGT
    TCTCTGACTG TGCCGTGGGA ACTGATTTTT ATTCTGCATG TCCCCCCTCC CCCACCTTCT
    CTTTGGGCCT CACTCCCAGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss321753469 CHEV_6_17029500 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs243904777 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:17079499 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm4876 predicted gene 4876 within coordinates
Rr626760 regulatory region 626760 1522 bp distal
Rr626761 regulatory region 626761 within coordinates
Tes testin LIM domain protein Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory