rs243904777 SNP Detail

Summary

• ID
  rs243904777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17079499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTGTCT TCTTTCATGG
  AGAACTTCTC CTGTAATAGG AAGTCTGTAA ATACAGAACA CAGTGAACCA AACCCTCCTC
  TCCTTCCTTT TCCTCTCCAG CTTGGCTCCC TCCCCACCAC CGAGTCATGC CCCTAAGGAC
  TTTTCTAACC CAGCAGGTCA GATAGCAGCT CTAAATCAGT TAAGGCACAC CATATAAATG
  Y
  ATTAGGTTTT GATTTGTTTT GTTGTCCGGA TCACGGGGCA ATGTGGGAAG TCGGGGTATT
  AGTAAATTAG CAAAAACAGG GACCCAGCTG GCAGTACTCT CCACTCCTGG TGTCTTAAGT
  TCTCTGACTG TGCCGTGGGA ACTGATTTTT ATTCTGCATG TCCCCCCTCC CCCACCTTCT
  CTTTGGGCCT CACTCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321753469	CHEV_6_17029500	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243904777					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17079499 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626760	regulatory region 626760			1522 bp distal
Rr626761	regulatory region 626761			within coordinates
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant