rs243845963 SNP Detail

Summary

• ID
  rs243845963
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78798529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG GGAGGCGAGG GGCTGCGCGC
  Y
  GAGCTGCGCG CCGCGGGGCT GCGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325025962	CHEV_15_78744759	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243845963					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78798529 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700027A07Rik	RIKEN cDNA 1700027A07 gene			within coordinates
Cpgi7305	CpG island 7305			within coordinates
Gm49510	predicted gene, 49510			Intron
Pdxp	pyridoxal (pyridoxine, vitamin B6) phosphatase			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr404490	regulatory region 404490			387 bp downstream
Rr505452	regulatory region 505452			1830 bp distal
Rr505454	regulatory region 505454			400 bp distal
Rr505455	regulatory region 505455			546 bp distal
Rr505456	regulatory region 505456			1284 bp proximal
Rr505457	regulatory region 505457			1493 bp proximal
Tssr132011	transcription start site region 132011			419 bp downstream
Tssr132012	transcription start site region 132012			402 bp downstream
Tssr132013	transcription start site region 132013			363 bp downstream
Tssr132014	transcription start site region 132014			41 bp upstream
Tssr132015	transcription start site region 132015			79 bp upstream