rs243668202 SNP Detail

Summary

• ID
  rs243668202
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138186073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAT TAGGAAAAGT CTGTTGGGCA
  T
  GGTGGGGAGG TAGCTCCAGT TCTCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321373808	CHEV_4_138014677	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243668202					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138186073 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	mRNA-UTR
Rr377275	regulatory region 377275	388 bp downstream
Rr602932	regulatory region 602932	1973 bp distal
Rr602933	regulatory region 602933	1818 bp distal
Rr602934	regulatory region 602934	1067 bp proximal
Rr602935	regulatory region 602935	1143 bp proximal
Tssr39863	transcription start site region 39863	1943 bp downstream
Tssr39864	transcription start site region 39864	1877 bp downstream
Tssr39865	transcription start site region 39865	1702 bp downstream
Tssr39866	transcription start site region 39866	1382 bp downstream
Tssr39867	transcription start site region 39867	1143 bp downstream
Tssr39868	transcription start site region 39868	1073 bp downstream
Tssr39869	transcription start site region 39869	845 bp downstream
Tssr39870	transcription start site region 39870	816 bp downstream
Tssr39871	transcription start site region 39871	760 bp downstream
Tssr44166	transcription start site region 44166	1879 bp upstream
Tssr44167	transcription start site region 44167	1695 bp upstream
Tssr44168	transcription start site region 44168	1613 bp upstream
Tssr44169	transcription start site region 44169	1519 bp upstream
Tssr44170	transcription start site region 44170	1157 bp downstream