rs243603081 SNP Detail

Summary

• ID
  rs243603081
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112356556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAAAAAG CCCAGCCATC
  CTGCATGTCC AAGGCTTGAT GTCCTGGGCC TGCTGCTGCC AGTACATTCC TTAGATTCCA
  AGATCTCAGT GGGGAAGAGC CTTCCCAAGA AGAATCCTCT TACACAAAGA CCAAAGTCAA
  GGAAGCTGGG TCTGTTTTCT GGTCCTCAAG AGTGCATCTG TTCTCCCCAC CCCCACTCCC
  G
  CCACAACCCC AGGCAGGTGA GTTTGCTCCT AGGTTGTGTC CTTTACACAG GAGGGTCTGT
  CCATCTGCTG ACAGGAACCA GTAGGGACTA GGCCACCCAC AGGCCAAGTA ACTGTGGCTT
  CACAGATAAC AGACAGACAG GCTCAGAGAC AGACAACCTG GGATGGCTTG CCAGTGTGCC
  TGTCTGACCC TCAGGCCCTC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366276181	MGP_WTSI_5_112637710	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243603081					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366276181	MGP_WTSI_5_112637710	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112356556 () rs orientation: forward

Symbol	Name	Function Class
1700028D13Rik	RIKEN cDNA 1700028D13 gene	within coordinates
Gm72184	predicted gene, 72184	1964 bp upstream
Rr617281	regulatory region 617281	1883 bp distal
Rr617282	regulatory region 617282	1532 bp distal
Rr617283	regulatory region 617283	1334 bp proximal
Rr617284	regulatory region 617284	1601 bp proximal
Tssr47952	transcription start site region 47952	1909 bp downstream
Tssr47953	transcription start site region 47953	1897 bp downstream