rs243415314 SNP Detail

Summary

• ID
  rs243415314
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79476001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCCCAG CAAGCAACTG
  CCGGAACCAG AGTAAATCAG CAGGCTCAAT TTTGAATTTA CAAACAGTTT ATTCAGGTCA
  CCGGGTTTTG TTTTGGTTTT TTTTGTTTTT TGGGGTTTTT TTGGGTTTTT TGGTGTGTTG
  GTTCCCACTG GTACATAAGT CACACAAAAG CTGTGCATGT ACTAAGCCCA TATGTGCGTG
  Y
  GTTAAGCCCA CATATACACA CAAATGATTG CTTTCCTAGT TCGTGTTCAC ATTGGGCACA
  TAAAAAAAAA AAAAAAAAAC TCAATAGATT CTTTGATTTA GGGAAGCTGA GTGTGTGCTT
  AGACTCATTT GCCTGTGCTT TCACGCCTCA GACCCCCTGA GAATTTATTG TGCTGTGGTG
  CAAGACGTTA AAGAACCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358584869	MGP_WTSI_3_79372616	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243415314					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358584869	MGP_WTSI_3_79372616	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79476001 () rs orientation: forward

Symbol	Name	Function Class
4930589L23Rik	RIKEN cDNA 4930589L23 gene	within coordinates
Cpgi13275	CpG island 13275	432 bp distal
Fnip2	folliculin interacting protein 2	898 bp upstream
Gm64946	predicted gene, 64946	1594 bp downstream
Rr578548	regulatory region 578548	1023 bp distal
Rr578549	regulatory region 578549	517 bp distal
Rr578550	regulatory region 578550	within coordinates
Rr578551	regulatory region 578551	514 bp proximal
Tssr29585	transcription start site region 29585	382 bp downstream
Tssr33723	transcription start site region 33723	1319 bp upstream
Tssr33724	transcription start site region 33724	1000 bp upstream
Tssr33725	transcription start site region 33725	930 bp upstream
Tssr33726	transcription start site region 33726	904 bp upstream
Tssr33727	transcription start site region 33727	831 bp upstream
Tssr33728	transcription start site region 33728	540 bp upstream