rs243378670 SNP Detail

Summary

• ID
  rs243378670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94235536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAAGGAG AAGTCAATGT
  CATCGAGTAT AAATAGCTGT GGCCAGAAAC AATATAGCGA AGGAGCCAAT GGGAGAAGGG
  CTCCCCAAAT TGCAGCATAA GTGACTGAAT TCAATGCCTC CCTTCACGCG GACCTCAGCA
  AACCACCAAC AGCAATCAAA AGATGAAAAC AGGGATGGTG CAGGATTTCC AATCTTACGT
  Y
  GGAAAGGCAG CCTTACTGTA TTTTTCTAGG GGTTCTGACA TTTTTAAACT CTCAGTTGGA
  GGCTAATGAA AATTAACTTG GATCTTGAAC TTAATATCCA TGAAAAAGAA ATCCTTTAAA
  TCGGGAGTTT GATATAAATA CACTCGAGGA AAGAGTACAC TGGAAACACA AAGTGTGGGC
  ATTTTAAAAA TTTTGTTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320397643	CHEV_2_94245348	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243378670					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94235536 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810002D19Rik	RIKEN cDNA 2810002D19 gene			1516 bp upstream
Cpgi11962	CpG island 11962			823 bp proximal
Rr561373	regulatory region 561373			470 bp proximal
Rr561374	regulatory region 561374			941 bp proximal
Rr561375	regulatory region 561375			1286 bp proximal
Rr561376	regulatory region 561376			1478 bp proximal
Rr561377	regulatory region 561377			1511 bp proximal
Rr561378	regulatory region 561378			1565 bp proximal
Tssr19003	transcription start site region 19003			1528 bp upstream
Tssr19004	transcription start site region 19004			1572 bp upstream
Tssr25328	transcription start site region 25328			189 bp upstream
Tssr25329	transcription start site region 25329			1456 bp downstream
Ttc17	tetratricopeptide repeat domain 17			Intron
				mRNA-UTR