rs243207402 SNP Detail

Summary

• ID
  rs243207402
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53371205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAAAAGC GACTTAAGGT
  GGCGGTGCAC CATTGCGTCT TGTGGGCGCG ACACGCTCTA TCAAAGGTCC CCTGGAGCTG
  GTGGGGCATT TAGGGGAGCA CCCGCTGGGC GCCTGGCCGT ATGAGCGCTG AGGTGCTCGA
  GAGCCTCCCT TCGCAAGGCT CTGGCCCCCT TCGTCCGGCT CCTAGTGCGC CCCGGCCGCC
  S
  GCCCGCTCCC GGAAGCTACG AAAGCCCGTA ACAAAGGACC TGCGGGGGCC GCCGGTTGCC
  GGAGCTGCGG GACCCCGGGA TCGGGCGGAT CGGCGGGTCT GAGCGCCCGC GGGGCCACGT
  GTCCCGGATC ACGGCGGTGA GCGGAGCGTG GCTCGGCGGC CTTCCCCGGA GCACCCGGCT
  GTCGGCACCC TCCGGAGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320768451	CHEV_3_53267706	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs243207402					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53371205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	within coordinates
Nhlrc3	NHL repeat containing 3	526 bp upstream
Proser1	proline and serine rich 1	mRNA-UTR
Rr374971	regulatory region 374971	within coordinates
Rr576696	regulatory region 576696	975 bp distal
Rr576697	regulatory region 576697	108 bp distal
Rr576698	regulatory region 576698	172 bp distal
Rr576699	regulatory region 576699	within coordinates
Tssr29113	transcription start site region 29113	194 bp downstream
Tssr29114	transcription start site region 29114	103 bp downstream
Tssr29115	transcription start site region 29115	75 bp downstream
Tssr29116	transcription start site region 29116	within coordinates
Tssr29117	transcription start site region 29117	111 bp upstream
Tssr33269	transcription start site region 33269	552 bp upstream
Tssr33270	transcription start site region 33270	478 bp upstream