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rs243089871 SNP Detail
Summary
  • ID
    rs243089871
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:78798436 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGTTCGACT GCGACGGAGT
    GCTGTGGAAC GGCGAACGCA TCGTGCCGGG CGCCCCTGAG CTGCTGCAGC GGCTGGCGCG
    GGCCGGCAAG AACACGCTGT TCGTGAGCAA CAACAGCCGG CGCGCGCGGC CCGAGCTGGC
    GCTGCGCTTC GCCCGCCTGG GCTTCGCGGG GCTGCGCGCC GAGCAGCTCT TCAGCTCCGC
    R
    CTGTGTGCCG CGCGCCTCCT GCGCCAGCGG CTGTCCGGGC CGCCCGACGC ATCGGGCGCA
    GTGTTCGTGC TGGGAGGCGA GGGGCTGCGC GCTGAGCTGC GCGCCGCGGG GCTGCGCCTG
    GCGGGGGACC CCGGCGAGGA CCCGCGCGTG CGCGCCGTGC TCGTAGGCTA CGACGAGCAG
    TTTTCCTTCT CCAGGTTGAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss394665381 MGP_WTSI_15_78744666 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243089871 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss394665381 MGP_WTSI_15_78744666 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:78798436 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1700027A07Rik RIKEN cDNA 1700027A07 gene within coordinates
Cpgi7305 CpG island 7305 within coordinates
Gm49510 predicted gene, 49510 Intron
Pdxp pyridoxal (pyridoxine, vitamin B6) phosphatase Coding-Synonymous
Noncoding-Transcript-Variant
Rr404490 regulatory region 404490 294 bp downstream
Rr505452 regulatory region 505452 1737 bp distal
Rr505453 regulatory region 505453 1984 bp distal
Rr505454 regulatory region 505454 307 bp distal
Rr505455 regulatory region 505455 453 bp distal
Rr505456 regulatory region 505456 1377 bp proximal
Rr505457 regulatory region 505457 1586 bp proximal
Tssr132011 transcription start site region 132011 326 bp downstream
Tssr132012 transcription start site region 132012 309 bp downstream
Tssr132013 transcription start site region 132013 270 bp downstream
Tssr132014 transcription start site region 132014 134 bp upstream
Tssr132015 transcription start site region 132015 172 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory