rs243024500 SNP Detail

Summary

• ID
  rs243024500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87823068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCAGAA ATGATAACCT
  GGGGAGACCT GCTGCCTTCA TCTACTTCCC AATGCTTGAG GCCAGCCTGT AGTCAGATAT
  TTCACCCAGA CATAAAGGAA AAGACCATTT TTTTTTTAGG AAATGTTTTT AATAAAAGAA
  AATTACCAAA AAAGAAAAAA AAAACCCAAC CCACAAAAGA AGAAAAAAAG GAAAAAAGTT
  R
  CCCCGCCCCT TTGTGTGTTC CTCTCTCTGC TCCTTTCTCC CCACTGCTGA CCCGTTTTTT
  GAGGTGCGCT AGGAGGGAGG CTCGCCTCTG ACCGGGTTGG CTTTCTCTTT GGACATGGGG
  CTTTGATGTT CTTCCAGAGT TGGTCTCTGG TGTTTTCTCA CATCCAGTTT GTAGCCCACT
  AAGAATACAG GGAAAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358786139	MGP_WTSI_3_87719683	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs243024500					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358786139	MGP_WTSI_3_87719683	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87823068 () rs orientation: forward

Symbol	Name	Function Class
Hdgf	heparin binding growth factor	mRNA-UTR
Rr579572	regulatory region 579572	1418 bp proximal
Tssr29850	transcription start site region 29850	816 bp downstream
Tssr29851	transcription start site region 29851	681 bp downstream
Tssr29852	transcription start site region 29852	666 bp downstream
Tssr29853	transcription start site region 29853	578 bp downstream
Tssr29854	transcription start site region 29854	434 bp downstream
Tssr29855	transcription start site region 29855	249 bp downstream
Tssr29856	transcription start site region 29856	213 bp downstream
Tssr29857	transcription start site region 29857	189 bp downstream
Tssr29858	transcription start site region 29858	158 bp downstream
Tssr29859	transcription start site region 29859	126 bp downstream
Tssr29860	transcription start site region 29860	within coordinates
Tssr29861	transcription start site region 29861	28 bp upstream