rs243015917 SNP Detail

Summary

• ID
  rs243015917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67657949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATCATCT CTGATAGAAG
  AAAACAAGAA TGATGACTTG ACTTACTTCA GCTGTGTGTG ATGAGGTGTT AAAAGAAATG
  TTCAGGACTC AGTGAGTTGC AGCAATGTTG TACACTGGAG AAAGAGCTCA GCTAGGATCC
  ATGCCTGTCA CAAAAGCCAC CCTAAGAGTA TGTCCACTCT TGCTTGCAGG GGAGTTGAGA
  R
  AAAGCAAGGA GAGGACGAGA AAGAAGATTT ATCAATCCCC AAAGTTGATA AGTTGTGCCT
  CAAGAGACAG GCAAACTCAA GACTTTCCAA AAATCTAGCT TCCAGGAAAT TAATAAATAT
  CCTCAATTAA TTTCAGGACG ACAGTAGTGA ATATCTCTTA GCTGGTTATC CTGAATCAAG
  AAAGAAATGT GGGTTCCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss368653902	MGP_WTSI_6_67630959	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	A	A	G	A	A	A	A	A	G	G	A	A	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs243015917					SNP	G	G	G	G	G	G	A	A	A	G	A	A	A	A	A	G	G	A	A	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368653902	MGP_WTSI_6_67630959	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67657949 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Rr379537	regulatory region 379537	954 bp upstream
Rr631677	regulatory region 631677	498 bp proximal