rs242997782 SNP Detail

Summary

• ID
  rs242997782
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:80018609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTCTTACC TGTAGTTCTG GCTTCTGACC
  CCGTCCCCCC AAAGCAAACT GGCAGTCCTG GGGGGAGACG GAGAAGAAGC TGGGCCGGGG
  CTCCGGGAGC ACAGCCCAGG AACCGTTGGC GGTATGGTAG GGCAGCAGGG CTGGCGGGCC
  M
  TCCGCATTGG CTGTCAGTTC CAGTACAGAG TCCTTGATAC GGCTTATGAT GTCATGGTTT
  TCCTCCAGCA GTTGTTCCAG CTGTTCTATC CGGTTCTGTA GCACAGAGAT TTGGCTCTGC
  aaaaaaaaaa aaaaaaaaaa aaaaaaaCAA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322281237	CHEV_7_87513747	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242997782					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80018609 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Man2a2	mannosidase 2, alpha 2			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr67437	transcription start site region 67437			1458 bp upstream
Tssr73220	transcription start site region 73220			4 bp upstream
Tssr73221	transcription start site region 73221			118 bp downstream
Tssr73222	transcription start site region 73222			1922 bp downstream
Tssr73223	transcription start site region 73223			1954 bp downstream
Tssr73224	transcription start site region 73224			1982 bp downstream