rs242948206 SNP Detail

Summary

• ID
  rs242948206
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138555274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAATGAG ACAGTCTCCA
  ATTTCTTTGA CCTTTGAGGG TGGTGGGTAC CTGTGTTAAT TGAACATATG GGGTTCTCTA
  GTAGACAGGT AAAAATACTC GTGTCTTTGG GATCTGGGGC CATGCTCATT ATAAGTAAAT
  ATTTGGGTAG AGGGCAGCTC CGTATCTGTG TGTGTGCTCT CAGTGTGTGT GTGTGTGTGT
  T
  TGTGTAGGGG GGGGTGTAAC ATTGTAGCAT GCTACACCAG TTAAGAATTG CAGTGGTCAG
  GAGGCTTCTA TGATTTGGAA CTTGGGTGGT AGAGTCAGGC TTTTGGGTCT GGGTCTTGCC
  GCTGGACTTT ACCACTGTGT GACCTACCCC CCCCCATGAC TGCTGCCAAG ACGGAGAGAA
  CTGAAGGTTG ATTTGCAGCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	I/LnJ	JF1/MsJ	MOLF/EiJ	RF/J	RIIIS/J
ss359921482	MGP_WTSI_3_138512477	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	I/LnJ	JF1/MsJ	MOLF/EiJ	RF/J	RIIIS/J
rs242948206					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359921482	MGP_WTSI_3_138512477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138555274 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586211	regulatory region 586211			166 bp proximal
Rr586212	regulatory region 586212			1967 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant