rs242666075 SNP Detail

Summary

• ID
  rs242666075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122039103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCCTCTCG AAGAGGGCGT GTCCAGGGCC GCAGCGCGGG
  CGGCCATTGG CTGAGCGGCG CTCCCGGGCG CACCGTCAAC TCTCACGAGG CGCTGGCGGC
  R
  TAGGCCGCGC GCCGCGCTCT GGCCGGCAGG GGGCGCACGT CCGCGCGCTG TTCTCCCCCG
  CGGCGCCGCC CGCTCCCGGC CGCCCGGCGC CACGCCCGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359496027	MGP_WTSI_3_121948372	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242666075					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359496027	MGP_WTSI_3_121948372	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122039103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	within coordinates
Gclm	glutamate-cysteine ligase, modifier subunit	103 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1644 bp downstream
Rr375675	regulatory region 375675	977 bp downstream
Rr397979	regulatory region 397979	within coordinates
Rr584262	regulatory region 584262	1602 bp distal
Rr584264	regulatory region 584264	1185 bp distal
Rr584265	regulatory region 584265	115 bp distal
Rr584266	regulatory region 584266	within coordinates
Rr584267	regulatory region 584267	19 bp proximal
Rr584268	regulatory region 584268	768 bp proximal
Tssr1039	transcription start site region 1039	289 bp upstream
Tssr31478	transcription start site region 31478	22 bp upstream
Tssr31479	transcription start site region 31479	109 bp upstream
Tssr31480	transcription start site region 31480	127 bp upstream
Tssr31481	transcription start site region 31481	156 bp upstream
Tssr31482	transcription start site region 31482	171 bp upstream
Tssr31483	transcription start site region 31483	322 bp upstream
Tssr31484	transcription start site region 31484	456 bp upstream
Tssr35443	transcription start site region 35443	225 bp upstream
Tssr35444	transcription start site region 35444	122 bp upstream