rs242364804 SNP Detail

Summary

• ID
  rs242364804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101214910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTTTCA CTTTTGTTTC
  TCTTCTGCGT GCCTCTCGTA TGATTGAAAG CAGAAGTGGA CCTTAGCGTT GACTAGGGCG
  CTACCACTTA CAGGTGAGAG ACACAGGGTA GGTCTAAGCT AAATACCGTG TTAGACCCCA
  GTTTGTTTGG ACCGAGAGAC AGCTGAGGGG GTAAAGTAGA GCCTAGCACC GTGCAGCTGT
  R
  GTTCCGTTTT GTAACATTCC TGTGCCTAGA ACTTAAAGAT GGATAACTCA GAACTGCTAA
  CCCCACAGGA CTGCTGCGGG GGTTCATGAC CTCTTCCGGC ACCTTTCTTG AGTGTTGACT
  CAAATATGTG TGTGAACACA GCTTCTTTTC CTCTTCTTCT GGGGAGCATC CTTGTCATTG
  AACAAGGCAA CATGTGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362612685	MGP_WTSI_4_101030318	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242364804					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362612685	MGP_WTSI_4_101030318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101214910 () rs orientation: forward

Symbol	Name	Function Class
0610043K17Rik	RIKEN cDNA 0610043K17 gene	within coordinates
Cpgi14499	CpG island 14499	535 bp distal
E130102H24Rik	RIKEN cDNA E130102H24 gene	1465 bp upstream
Rr596126	regulatory region 596126	1599 bp distal
Rr596127	regulatory region 596127	1073 bp distal
Rr596128	regulatory region 596128	1338 bp distal
Rr596129	regulatory region 596129	488 bp distal
Rr596130	regulatory region 596130	83 bp proximal
Rr596131	regulatory region 596131	902 bp proximal
Rr596132	regulatory region 596132	1445 bp proximal
Tssr37988	transcription start site region 37988	1830 bp downstream
Tssr42553	transcription start site region 42553	1784 bp upstream
Tssr42554	transcription start site region 42554	1535 bp upstream
Tssr42555	transcription start site region 42555	1210 bp upstream
Tssr42556	transcription start site region 42556	1195 bp upstream
Tssr42557	transcription start site region 42557	984 bp upstream
Tssr42558	transcription start site region 42558	963 bp upstream
Tssr42559	transcription start site region 42559	920 bp upstream