rs242321841 SNP Detail

Summary

• ID
  rs242321841
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28079040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCAGCTC CGGCCCCTCT
  CGGGGGGTAG TAGGGAGGGT TGTGTACGAC CAACTGGAGG TGATGGTAGC GGGGCGTCCT
  AGTGTTTTTC AGAGGTGGAA GGCAGTCGGG AAGAGAACTG GGGCAGAAGT GGGGGCAGGG
  CTCTAGGGAC AATTGACAAG GGCAGAGACT GAGGGCGTGT GCGTGTGAGA CAGACGGGGG
  S
  GGGGAGAGAC AAGTTGGAAG AGACAGAGAT GGCCAGAAGC CGAGAGAAAA ACAAAGAGAC
  AGTGAGAGAC ATTCACAAGT AGGATCTGCT GGTTTAGGAC TGTGATTCCG GCCCCTCAGG
  GAGGCTGAGG CAGGAGACTG GTAGTTCAAG GCCTGGCTCC ACTATACAGT GGGTTCTAGG
  GCAGCTTGAG TAACTTGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858543	MGP_WTSI_7_29164634	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242321841					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858543	MGP_WTSI_7_29164634	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28079040 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	797 bp downstream
Gm73795	predicted gene, 73795	1634 bp upstream
Rr368284	regulatory region 368284	919 bp upstream
Rr400210	regulatory region 400210	104 bp downstream
Rr644240	regulatory region 644240	1661 bp distal
Rr644241	regulatory region 644241	625 bp distal
Rr644242	regulatory region 644242	371 bp distal
Rr644243	regulatory region 644243	within coordinates
Rr644244	regulatory region 644244	515 bp proximal
Rr644245	regulatory region 644245	628 bp proximal
Rr644246	regulatory region 644246	1144 bp proximal
Rr644247	regulatory region 644247	1645 bp proximal
Tssr2163	transcription start site region 2163	215 bp upstream
Tssr2164	transcription start site region 2164	113 bp upstream
Tssr2165	transcription start site region 2165	70 bp upstream
Tssr65464	transcription start site region 65464	1562 bp downstream
Tssr65465	transcription start site region 65465	225 bp downstream
Tssr65466	transcription start site region 65466	1644 bp upstream
Tssr65467	transcription start site region 65467	1668 bp upstream
Tssr65468	transcription start site region 65468	1777 bp upstream
Tssr71496	transcription start site region 71496	1984 bp upstream
Tssr71497	transcription start site region 71497	1736 bp upstream
Tssr71498	transcription start site region 71498	1675 bp upstream
Tssr71499	transcription start site region 71499	1581 bp upstream
Tssr71500	transcription start site region 71500	1557 bp upstream
Tssr71501	transcription start site region 71501	1530 bp upstream
Tssr71502	transcription start site region 71502	1505 bp upstream
Tssr71503	transcription start site region 71503	1464 bp upstream
Tssr71504	transcription start site region 71504	1433 bp upstream
Tssr71505	transcription start site region 71505	1416 bp upstream
Tssr71506	transcription start site region 71506	1402 bp upstream
Tssr71507	transcription start site region 71507	1355 bp upstream
Tssr71508	transcription start site region 71508	1321 bp upstream
Tssr71509	transcription start site region 71509	1261 bp upstream
Tssr71510	transcription start site region 71510	1217 bp upstream
Tssr71511	transcription start site region 71511	1181 bp upstream
Tssr71512	transcription start site region 71512	1101 bp upstream
Tssr71513	transcription start site region 71513	514 bp upstream
Tssr71514	transcription start site region 71514	380 bp upstream
Tssr71515	transcription start site region 71515	352 bp upstream
Tssr71516	transcription start site region 71516	666 bp downstream
Tssr71517	transcription start site region 71517	1312 bp downstream
Tssr71518	transcription start site region 71518	1334 bp downstream
Tssr71519	transcription start site region 71519	1355 bp downstream
Tssr71520	transcription start site region 71520	1399 bp downstream
Tssr71521	transcription start site region 71521	1411 bp downstream
Tssr71522	transcription start site region 71522	1453 bp downstream
Tssr71523	transcription start site region 71523	1677 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR