rs242321439 SNP Detail

Summary

• ID
  rs242321439
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141811407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG GCCACGCTTG GTCTCTGTCC
  T
  CAGGCCCGGG GCTGGGGGTT TCGCG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321392528	CHEV_4_141640011	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242321439					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141811407 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15252	CpG island 15252			within coordinates
Rr603987	regulatory region 603987			1703 bp distal
Rr603988	regulatory region 603988			within coordinates
Rr603989	regulatory region 603989			204 bp proximal
Rr603990	regulatory region 603990			255 bp proximal
Rr603991	regulatory region 603991			863 bp proximal
Tmem51	transmembrane protein 51			Intron
				mRNA-UTR
Tmem51os1	Tmem51 opposite strand 1			202 bp upstream
Tssr44419	transcription start site region 44419			101 bp downstream
Tssr44420	transcription start site region 44420			125 bp downstream
Tssr44421	transcription start site region 44421			431 bp downstream
Tssr44422	transcription start site region 44422			569 bp downstream