rs242004795 SNP Detail

Summary

• ID
  rs242004795
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131989184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGATAC ACCTCCCCCC
  TCAGCCTAGC GATTTAGGGG AGCCTGAGAG CTTAGGCCTT CGGTCCTAGA AAGGCAGTGT
  TGGAGAAGTC GCGGGAGGCC CCAGGGGACT GAATAAGGTT TAGATGCAGA GGTCATCTCG
  CCCTGACTCT TGTGGAGGAC TAGGGCTTTT CTTTCTCCAA ATCCTCTTTA TTGACGCTTA
  Y
  AATTTATCAG GATTTCAGGT TACCAATGTG GAATGAAAAG ATGCTGCTGA GCATAGATAG
  TAACCCCTTC CCGCGTCCAA ACCATGGCTC TTTGCGCAGG TTTTCCTGCT TGTCCGGGTT
  CGGAGTTCAA ATTTGAACTT CCTTGGAACC GGTACAACAA CTGTGCAGTG ACTTGACAAC
  TCTAAGCCAC CTATTTCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331990	CHEV_4_131817788	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242004795					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131989184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14953	CpG island 14953	31 bp distal
Gm28874	predicted gene 28874	within coordinates
Gmeb1	glucocorticoid modulatory element binding protein 1	271 bp upstream
Rr600911	regulatory region 600911	1335 bp distal
Rr600912	regulatory region 600912	363 bp distal
Rr600913	regulatory region 600913	within coordinates
Rr600914	regulatory region 600914	995 bp proximal
Rr600915	regulatory region 600915	1190 bp proximal
Tssr39362	transcription start site region 39362	1356 bp downstream
Tssr39363	transcription start site region 39363	1335 bp downstream
Tssr43650	transcription start site region 43650	301 bp upstream
Tssr43651	transcription start site region 43651	251 bp upstream