rs241956573 SNP Detail

Summary

• ID
  rs241956573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98220269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAGACA ATAGTTTTTT
  TTTTTTTAAT CAGTATGGGT CTTTGCTAGT GTGGATATCA TATGCACCAC TTGCATGTAG
  TGCCTTTGTA GGCCAGAAGA GGGCATCAGA TCTCCTGTAA CTGGAGTTAC AGAAGGTTAT
  GAGCTACCAT GTGGGTGCTG GAAATTGAAC CCAGGTCCTT CGGAAGATTA GCCAGTGCTT
  Y
  CCCCCCCCCC CCAGTGGTTA AGAGCACTGA CCATTAAAGA TTTATTAACC TGCTCCTGGA
  AATATGCCAC TAGCCTTGAA GACAGCCCTC ACTGAATATA TCATTTTAGA ATTGTTACAT
  TTTTTAAAAT ATTTTTATTA CATATTTTCC TCAATTACAT TTCCAATGCT ATCCCAAAAG
  TTCCCCATAC CCCCCCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J
ss362541364	MGP_WTSI_4_97998723	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J
rs241956573					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362541364	MGP_WTSI_4_97998723	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98220269 () rs orientation: forward

Symbol	Name	Function Class
0610025J13Rik	RIKEN cDNA 0610025J13 gene	72 bp downstream
Rr595725	regulatory region 595725	91 bp distal