rs241859500 SNP Detail

Summary

• ID
  rs241859500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142324374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTAGAAG TGAAAATTCA
  TGTGATTTTT AATCGGGTCT TATATTTGAT ACTGCAAACA TGGACTCTGT AGACATACTA
  AATTGTATTG TTGGGATTTG TTTTTACAAC ACAGTGATAG GGCAGCTGTC TTTGGGTAGA
  CATTTTGTAT CACATACATC CCCTACTGGA TATTCTTAGT TGTGTGCTCA TAAGTAATTC
  R
  AAGATGTAGC TTGCTCTAAG CTGGGATTGG CATGTTATAA ACATGATAAA AATCTGAACA
  TATCCATGGA ACACAGCTCC TAGGGCCTCA TGCTATCTGC AGACATTGGT TCCCAGGGTA
  GACAATGGGC AGTGCCCAAT GTGGGAAGGC TCTGTGGTTG CTGGATGAGC AGAGTATTTC
  ATTGGAGAGG AGAAGAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	NZW/LacJ	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ
ss360024871	MGP_WTSI_3_142281577	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	NZW/LacJ	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ
rs241859500					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360024871	MGP_WTSI_3_142281577	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142324374 () rs orientation: forward

Symbol	Name	Function Class
Gbp2b	guanylate binding protein 2b	mRNA-UTR
Gm54185	predicted gene, 54185	within coordinates
Rr398088	regulatory region 398088	1269 bp upstream
Rr586457	regulatory region 586457	122 bp proximal
Rr586458	regulatory region 586458	1499 bp proximal
Rr586459	regulatory region 586459	2000 bp proximal
Tssr32216	transcription start site region 32216	428 bp downstream
Tssr32217	transcription start site region 32217	390 bp downstream
Tssr32218	transcription start site region 32218	336 bp downstream
Tssr32219	transcription start site region 32219	299 bp downstream
Tssr32220	transcription start site region 32220	285 bp downstream
Tssr32221	transcription start site region 32221	267 bp downstream
Tssr32222	transcription start site region 32222	211 bp downstream
Tssr32223	transcription start site region 32223	154 bp downstream
Tssr32224	transcription start site region 32224	100 bp downstream
Tssr32225	transcription start site region 32225	221 bp upstream
Tssr32226	transcription start site region 32226	269 bp upstream
Tssr32227	transcription start site region 32227	1983 bp upstream
Tssr35947	transcription start site region 35947	562 bp downstream