rs241805341 SNP Detail

Summary

• ID
  rs241805341
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:41522526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTAAAGC AGAGTAGATA
  GAGTCAAGTA CCACGGAGGG AGGCAAGAAT GGTACTCTTT CTATCTAGGT GCAGCCTGTA
  AAGACCTAGG TGCATTGAAA ATGATGCACT GGGACAAAGA AACTGATCAG AGGCCAGATG
  TGCTAGGCCC ACATCTACAC TCCCAACACT GGGAAGACTT AAACAAGAGC AGTGCCAGGA
  R
  TGTGAGGCCA ACCGGAGCTA CACAAAGAGT TCTAAGCCAG TGTGGAATAT AGAGAAATTT
  AGGCCATTAT GGATTGCAGA TTAAGATCCT GTCCACCCCA CCCCCTAAAA ATCCAAAGAA
  AGAAAAGAAA ACTATAGAGA CTCCTACCAA AAAGAATCAG AATTCCAGCA TGATGGCCGA
  AGAGTTTGAA GCCAAGCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368070463	MGP_WTSI_6_41495591	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241805341					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368070463	MGP_WTSI_6_41495591	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41522526 () rs orientation: forward

Symbol	Name	Function Class
Gm68244	predicted gene, 68244	1302 bp upstream
Gm68268	predicted gene, 68268	507 bp upstream
Rr629250	regulatory region 629250	1548 bp distal
Rr629251	regulatory region 629251	812 bp distal
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	1138 bp upstream
Trbj2-6	T cell receptor beta joining 2-6	1947 bp downstream
Trbj2-7	T cell receptor beta joining 2-7	1736 bp downstream
Tssr1821	transcription start site region 1821	702 bp downstream
Tssr1822	transcription start site region 1822	1928 bp upstream
Tssr55940	transcription start site region 55940	1972 bp downstream
Tssr55941	transcription start site region 55941	1950 bp downstream
Tssr55942	transcription start site region 55942	1889 bp downstream
Tssr55943	transcription start site region 55943	1765 bp downstream
Tssr55944	transcription start site region 55944	1563 bp downstream
Tssr55945	transcription start site region 55945	1072 bp downstream
Tssr55946	transcription start site region 55946	759 bp downstream
Tssr55947	transcription start site region 55947	575 bp downstream
Tssr55948	transcription start site region 55948	485 bp upstream
Tssr55949	transcription start site region 55949	671 bp upstream
Tssr55950	transcription start site region 55950	978 bp upstream
Tssr55951	transcription start site region 55951	1705 bp upstream
Tssr55952	transcription start site region 55952	1752 bp upstream
Tssr55953	transcription start site region 55953	1788 bp upstream
Tssr55954	transcription start site region 55954	1836 bp upstream
Tssr55955	transcription start site region 55955	1861 bp upstream
Tssr55956	transcription start site region 55956	1902 bp upstream
Tssr60576	transcription start site region 60576	1313 bp upstream
Tssr60577	transcription start site region 60577	1223 bp upstream
Tssr60578	transcription start site region 60578	1202 bp upstream
Tssr60579	transcription start site region 60579	735 bp upstream