rs241713236 SNP Detail

Summary

• ID
  rs241713236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121084924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGAGTGG GCAGTGGAAG
  TCTATCATTT CAGAGGACCG CGGGAGGAAT AAGCCAGAAA TGCTTTGTGA TAAACTTAAC
  TGCAGGGCTA TGTCTTCCTC CCTTGCTACC TGAAGCCAAG GGGTTTCCAA TCCTCCCAGG
  AATATGACAT AGCTTGAAGT GATCCGGATT CTGGTTATAG TTTGAGATCT GTGAAACTGT
  Y
  TAGAAAACAT AAATGTCAGG AAAGGGCGGA TTTGAATGTT TTCCCCCTAA GAGTATGCCT
  CTGACTGGCA AAAATTTTCT AGTTCGGTTT GTCTTGGAAC CCGTAAGGAA GAAAGGAAGT
  AGTGATGTAT GCCAGGAGCC TCAGGCAAAA CCTGGCAGGA CAGGAGCAGC TACTAACCCG
  GGGCTTCGTG GTCCTTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359470102	MGP_WTSI_3_120994193	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241713236					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359470102	MGP_WTSI_3_120994193	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121084924 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	498 bp upstream
Gm56787	predicted gene, 56787	within coordinates
Rr367543	regulatory region 367543	263 bp upstream
Rr375663	regulatory region 375663	998 bp downstream
Rr584038	regulatory region 584038	within coordinates
Rr584039	regulatory region 584039	348 bp proximal
Rr584040	regulatory region 584040	556 bp proximal
Tssr31434	transcription start site region 31434	450 bp upstream
Tssr31435	transcription start site region 31435	546 bp upstream
Tssr31436	transcription start site region 31436	576 bp upstream
Tssr35412	transcription start site region 35412	323 bp downstream